NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10020045

Scaffold Ga0326728_10020045


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10020045 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12843
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F064949Metagenome / Metatranscriptome128Y
F073232Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100200455F008511AGGTGGVNAPAVARAKVHERIVVVRLADAAEAIAVLSLVFGLLLVLFPVSFPKMFVNSWEHGQLMPVMMALALLLDTCLYVRIAIMRSAKPGIVAAACLGSLPLLVVGGLSLLLQSAVSQTLALDRPNLQLRVGEEILAHTYLGLISAVFLPFLIIRLLQQFKATNS
Ga0326728_100200456F073232GGAMPDWTSLKWLGWISLYIIPVVFLPWALSRAWVHQHGKDLQLSPKRLFQRGELGLLGLVLASSVIWNLLQSQFMPHTIALGSVLMALGGIMAASVWVETYCRESSVKSWHPERAWRDSRSLALLVFSMAAVMEILLDRFAKVAGQ
Ga0326728_100200457F064949N/AMLLFESLSAGVMAIFAGFVLVTIVVGFYVIIIWPLTFWDLANLRLEKYTSWIHPVIWSVFACGSLAGYWCFGGAAFKSRQKARAPSTNRSRR
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