NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10025079

Scaffold Ga0326728_10025079


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10025079 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10718
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000885Metagenome / Metatranscriptome849Y
F015120Metagenome / Metatranscriptome257Y
F076450Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1002507912F076450N/AMRSDSQGRAIQIGRYLNTPLVLNVGVTSASIQLNQNQHYRLWGSVDLFFQFGPMGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISQIDAQGV
Ga0326728_100250795F015120AGGMLVFVKRFFKTRYVGLLEEEVARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRKRSWQQVQVKREQDAMKG
Ga0326728_100250797F000885AGGAGGMASPKVVFIGEVAQIAGVGAVVAGVVLSLHHWGAAAALIGGFAAFFVGKKLRAS
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