NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10029004

Scaffold Ga0326728_10029004


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10029004 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9527
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1002900410F003942GGAGMLGHRLKPTIHRYEDVELIEVHSEYLECRFLVAKDEWESGKTLLNIFSPLDGNVLGFPHYRLHRDNISAAGPKLPDVTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGTGLNPARS
Ga0326728_1002900411F003389GGAMQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDSDNKDDVAKAEAFMEAEDFDGLDEWIHEVVIEPLNTYSVDHHTLDVSACPASAPTANERVLNRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLNPGEIDELCDRLNTGFCN
Ga0326728_100290047F004301N/AMEPSVNARNAKRQLDSLRSQLATAQADLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFGMLDTDEEPVYRLGSYPVKVMRWIRHLLFTLNAERRDVLSAIADLEPKVATLSQIIGSAIQ
Ga0326728_100290048F003764GAGMQIQEDSPYNQDENPAALLAGAQIEAAGLHRCLKIVNLWSQSSALPQSRHDEMVEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAASILDDWECPPAEQGLLFPIPNDPTKAASHATPRK
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