Scaffold Ga0326728_10039809

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326728_10039809

Scaffold Ga0326728_10039809

Overview

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10039809 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7395
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005617	Metagenome / Metatranscriptome	395	Y
F014641	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100398098	F014641	GGAG	MITDNTVKQTVYEHILKAASRRLEQAIPGSDGAFAHLSLGELVNLLFLMRGEWGSIGDFVTTQKALRASVGDDLLWAERLKPSPAPIELVH
Ga0326728_100398099	F005617	AGGA	VTDWNGMTDIEAFTQGRVSGESRRSTRVRLKVLIEAQGIAEPLTCQGETIVVNRHGALISTAVALLVGMRIEIHVIPTDKHAPADVVYVDPDRPQVCGIGLVKPQNIWGLPVPPDDWHEGDQK

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