NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10040212

Scaffold Ga0326728_10040212


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10040212 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7330
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F015314Metagenome / Metatranscriptome255N
F057004Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100402121F057004AGGAGMETEKKAGFDASKPFVVPILSGGEKSCEVRFPSDEEWCAWARAQRTVRHFLGRGKSQSEDVDLPKINAELFTKIRTDKDGPEFDDAEAGMVIGRIERCAVASVEREG
Ga0326728_100402124F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGDGGNVRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0326728_100402125F002261GGAMPNWPSIEAFVDGVISQTFGEPVVYQPVQAGAAQGSPFTVTAVRHLRPREESGAMANFEEISVKPSDFANLPAKGDWVTAWGAQYVVTTVRQPDAYGMLSLALLQRS
Ga0326728_100402128F015314GGCGGMMLRRESWARLTRGLIPPLYVLHPLQGFTPSDIGDEYPAPDATNKVQLTRARQLYEQRRIGTQAEVERTLSRLPKQEPAKPGKEKRHGSQSGKNAR
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