NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10112500

Scaffold Ga0326728_10112500


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10112500 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3190
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025048Metagenome203Y
F031889Metagenome / Metatranscriptome181Y
F041367Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_101125002F025048AGGMLNPAPITDAIASALSSIPDLAAAMTVLDAEGNRVVRIDAFHYLLGQEHRQAEAIYKMAAPSMLVAWDGTQGGNFNGQSIWKHRFNVYFRMGNAAGLAAPVGYEELWWLVCNQPPANSPVNIRYMELYPGLDIMDTPSVAHALDEDLQDRFVGTVVIPELGDN
Ga0326728_101125005F031889GAGGMLYGELPDVSLGGGATAKGVTVKVANPPKTAVLGLPTGQQILDRLAQQKSIRRNLGRRKSQTDFVPNLKADLDLFNQIRVDKDGLEFDEYEAGAAVARLTFCEVTDCQRAGDEYKISLKTPFGDTMHSMKIPTQRDVTVYRRMVVSATDLPHGQEELRYRIEPAVDLYNATVSKIEGYAASYKGADVPPHHKSAVVVELVSAIDDLDPVLDPNL
Ga0326728_101125006F041367N/ALPLRALIYWSVRAHELCDGGEDGPRACPDANDVTCAKCGVIRTVEDTTAPGECAHCGSWHFTVNRCAHCKLDDLDFARRHSNAGRLFERLLDLEFDAAHFSIPWTDVTAEEVRGLQILKEER
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