NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10190263

Scaffold Ga0326728_10190263


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10190263 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2097
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F025427Metagenome / Metatranscriptome201Y
F027079Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_101902632F003859AGGAGMDEPNAEKDTRLESVRIPGSSWPGASLYKSLKLGWQWRRLRWAVAAASEAAQGHEANGVRPGAQEFKTLYHELANKVQAYSHESRIPVDTLKAKLPALCAIERLARPDAAVPQNRLGLTLGIVLAGVLGSIGIGVLIGLGTGMAHWIAHLFA
Ga0326728_101902633F016632AGGAGGLTGILEVFALAEIGSGIGFLASWRNKVLKARVNYFRQPNNRSSPFDKVLRGKVGRAFTRQDRLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGERPW
Ga0326728_101902634F027079AGGAGVIKSFLNLCLLLLLDILAYMVAIVAAAAVAWAAVCGARWIFAAFRNSVMSLRGRWRKKEMHAHAAR
Ga0326728_101902635F025427AGGAGMQPGEMEELLASLGTCPIQKKGLFWRLFKLCWKKLLFIALMLVLPGGLIVLFLCATAWALNWEHEMTAYMDVTYKKWKEEHDVHSE
Ga0326728_101902636F002761AGGAGGMTFTPSSTSSLTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESR
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