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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033405 Open in IMG/M |
| Scaffold ID | Ga0326727_10000059 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 467041 |
| Total Scaffold Genes | 406 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 261 (64.29%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000780 | Metagenome / Metatranscriptome | 895 | Y |
| F001021 | Metagenome / Metatranscriptome | 804 | Y |
| F001355 | Metagenome / Metatranscriptome | 716 | Y |
| F001734 | Metagenome / Metatranscriptome | 644 | Y |
| F003010 | Metagenome / Metatranscriptome | 513 | Y |
| F007996 | Metagenome / Metatranscriptome | 341 | Y |
| F009619 | Metagenome / Metatranscriptome | 315 | Y |
| F009823 | Metagenome / Metatranscriptome | 312 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326727_10000059180 | F009823 | GGAGG | MRPYLLLIAVVLMAVAAFGQQPVPRPGPGFYGYGPFIPLVTTPEISLQTVSPNPVGATNATTGLIAGATNATLSEIQGSTSSVYTEAVWYQGGAPLTTSQVHLWPEPLGREGRVMHEPPAFEERSREERAPRQEARAVWMYYTGAEHSSDAALVANQAKGVRKATHVPYNNDDVKRQNEKNGTVTYRGKTEKM |
| Ga0326727_10000059227 | F009619 | N/A | MAEFSILTNRKRAVVALVHSVAFLLIAVRQLMAANPAAGIWVASEVSKGTWILCAIFTVVSSILLWLLLISRGWLEKFYFGFCTISATSGLIRTAAGDQAFHAGLYIRVVMLISAVLVGLLIVRVHSRNQSRLQPEYAEEAN |
| Ga0326727_10000059230 | F001021 | AGGA | MTKAMLVGVFSACLAFAAGIAVAEKVHDWPDLAAAHNHTQEAIKEMDHARAANHYDMAGHGAKAEEHLRAAERELHEAIEAARMAH |
| Ga0326727_10000059243 | F007996 | N/A | MVVLSGILMIVAYMAGTHHATVAYAGPSTQAVVPKSYGKLVAAIPDSIGTGLVFEDAEGVIRFVSVNGMKEGELARYDTTPTHGGIPRSYGHLVSAVVNNGATGLIFEDAHGVIRFVTLTGVTERELTRE |
| Ga0326727_10000059246 | F001355 | AGGAG | MHSLMIDYPITKRLPCSVCGLDTFRRKGWFLVVENRWLDRLKILSWHSSLAVQKDMKSVCCRQHLKTLISHWLDQASLRLPPGYNPPLPISSDPTLTDVDLGPNGVGLLVGELAVHRQSFSRVWSGSPETLECILDALLTVGAENKPHALEFQLFGSPHSPHGLSLQ |
| Ga0326727_10000059348 | F003010 | GGAG | MANSNKKSLFESIPMLVLLGLLAGAVGGLGLGLIQTRAASSSATTAK |
| Ga0326727_10000059351 | F001734 | N/A | MPSRFPNLWLLLPCAVLLCSLAVVAQDDSPSLGDIARNLRKSKAQQAPPPQTTAPARTVIDNDNLAQVMEDARKARPVDKDKTVFSIDPSGNTLKVSSPDATCSLSFNARASSLLIKPVLIEDLPLTDLLKLDGPGSIQNENLQLEVFNGTDWDIREITIGLTLERGAGDTASRGVRAHIIPAAQGMAPNSVKRHSDVTLLYHLKATAKPFSTTSFRENIGITPSPDEDWRWSIVEAKGIRPSQPQPAPASLRAPLFATPAQVAPQR |
| Ga0326727_10000059360 | F000780 | N/A | MDRQVKLKQPAQAELADKTGAKKSRRPDHLMCRTPLWGVAGFVGCAYFAWISFSHVIRNEFEWPHDFWTAATYLVWILLLAGLALDTRCLRERLFFGVLVVNFMVGCGLTLWSGIPSADVRIARIGTGALWTLAALLSLTTLRGSAEAQTHD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |