NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10000093

Scaffold Ga0326727_10000093


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10000093 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)387545
Total Scaffold Genes332 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)250 (75.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003353Metagenome / Metatranscriptome492Y
F017275Metagenome / Metatranscriptome241Y
F024149Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_1000009310F024149GGAGLHSLIINRPGEELVENVRCLRCNRELESGRKFVAIYMFAQTVGIKPRQKSAAQRIVFCPQCSVSLALGLAPEGALNIAAWDMIRDLVSSDPALNQAAWENLRGVVRLLEAAEAQPEILPEPEPKPRSDAWVNFSRAG
Ga0326727_10000093169F003353GGAMKSTALLLIVLSGLTIASAEPLGEYQHGTVVRMRMGDCTLNHRGFANAFGPPQGGTNEGACPEYVLVTDKVVFVIVGRSSNQLVPLAEIVDFRFQKKELAVRVDDARHESKFAIKEMTLRSEWELMQRQIEDERHDTSSHGVDTSMVLRNR
Ga0326727_10000093185F017275GGAMTVLSQVITTFWSTYGAAAIALVGFVLNGLLAYGAAQKLSGQHEEQRIADQAWKKDHGAQALMRDVAIAALQAMGNSNDATVKGIQGQLLLIQAELQELRNRAGYGAFRSSSHK
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