Scaffold Ga0326727_10002068

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326727_10002068

Scaffold Ga0326727_10002068

Overview

Basic Information
Taxon OID	3300033405 Open in IMG/M
Scaffold ID	Ga0326727_10002068 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	70812
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (53.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022249	Metagenome / Metatranscriptome	215	Y
F050334	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_1000206846	F022249	GGAG	MLKRNGENCEHAVPNYPGLLTATEFKAYNAAVPLVAEQVRLAHERATALSKIERHSAEIAEQVASQSTNGLPSLTVKETPESVWQVRHTLFKSPRSEILLCSRAVGEKQQFGVVEKFDPNSPYARINGETDLQMRSNNAFLLLQNYVECERGVLQMFRKDIEATVEEQLLEKFPGQNHSRVVKAISARCETQTPSESQKEKPARSVKLRM
Ga0326727_1000206848	F050334	AGG	MEFLVIMGIGTLVAIWIVANLPKSRGLNREMDSFEQKPSQIPASRRSMSEVYSTDDFDYLRKLNRHKRDPQHWPFPFPPQQ

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