NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10047166

Scaffold Ga0326727_10047166


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10047166 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6908
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0326727_100471667F004581AGGAGGMKQAEIYNGHAGRFQLMAEHIELSMTPEHQQKHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLELSAGMIPGEERSQTVRGLFMMTAGCSEYDQTVKYTILPLPGREMETARLLKATAVYSLERAEAHSHTIPLLTRQPAQLER
Ga0326727_100471668F014350N/AKTKEHQPEQAAPTDTDFPYAGQKADPQQELDTLENQAEAPVRGSYLREKDGYDALSPEQKAVCDKDFESYLDRLTRPIEVKEGETRQDAIQRAKEEYCAARQEHTAHHREMAKIMLASKINCLNSEYPRNSFSLRSPDVAKEFLATAFYHNASAAKGLTSFDKDVFAASRKAALREFSALAASVENSGSATKEFNNTFALCIERPPIGAPNQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELAR
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