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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033405 Open in IMG/M |
| Scaffold ID | Ga0326727_10072011 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4964 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025048 | Metagenome | 203 | Y |
| F030458 | Metagenome | 185 | Y |
| F041367 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326727_100720112 | F030458 | GAG | MPFQAKITRARFVLGPFTAEDMQTIGDVLADSISGRIRKAVNVNDDPAKVLKPGRNGRRGYPDYKAARGLQPLRDWVWTGRTMRSLKVKSANENRVVIGFVDPNADRVAHVNNLRERQFGVSPKDRSALNAIVLAVLKRARVVRVKRAA |
| Ga0326727_100720113 | F041367 | N/A | VRAHELCDGGEEGPRGCPNANEVTCQQCGATSEVEDTAAPGKCPQCGNRQFAVNRCARCPVNELEYVRAHSAAGRLFERVLELEFDCAHFAVPWDEVTAEEVKGLQVLQDERERYQRERQREKQPNAFPS |
| Ga0326727_100720117 | F025048 | AGG | MLNASPITDAIAATLACIPDLFTAMAVTNASGDLECRISAFHYRLGQEHQLAAAIYKMPAPAMLVAWDGTQGGNFDGQTIWKHRFHVYFRMGNAAGLAYPVGYEDLWSIVCNKPPTGSPVNIRYMTLYPGLDIMDTPSMAHALDEDQVDRFVGTFVIPEIGDQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |