NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310810_10016390

Scaffold Ga0310810_10016390


Overview

Basic Information
Taxon OID3300033412 Open in IMG/M
Scaffold IDGa0310810_10016390 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8833
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041131Metagenome160Y
F041681Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0310810_1001639011F041681AGGAMKMVRSKDKALLVSRLALLITIALAFSLKAHAGVATMPWDAGLKSMALDLAGPVAWTIGVIGVVMGASSVVIHHELTGFGQKALITGVGAMMAGFAPGVLTALGIGAAVV
Ga0310810_100163904F041131GGAGMPQRTIRFSETTLQQIQRAAKQKGFASIAAVIRHAVDQELTGGDGVEQRIAATLDRIQTDLSGMQRVQQTLFAFVDTLAKALLTGSAEQASPSVAKGKEQYERFLNNAAATMLNGSHPLLREGAE
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Institute for Fundamental Biomedical Research
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