NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310810_10022673

Scaffold Ga0310810_10022673


Overview

Basic Information
Taxon OID3300033412 Open in IMG/M
Scaffold IDGa0310810_10022673 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7602
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000411Metagenome / Metatranscriptome1170Y
F071507Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0310810_100226731F000411N/AAGGCQCGALSAICLVVSVRALQIFLLLAMLLFGSGMGARGELTTGKSYSISFADINGQKLSTADGHITIVVLATSADREQARSVGDHVPDFCLGNPAYKMITVVHFVREHLAIGRRMATALIRHRVRDEAKRLQARYDGQKIGRDAKSDIFVVTDFDGTIASQLGQSPGATDFCVFVFGKTGELLAQWHSVPSTNELATAVKK
Ga0310810_100226739F071507N/AQSLNKMNVNGKITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIVSE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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