NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310810_10066088

Scaffold Ga0310810_10066088


Overview

Basic Information
Taxon OID3300033412 Open in IMG/M
Scaffold IDGa0310810_10066088 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4376
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002235Metagenome / Metatranscriptome579Y
F014909Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0310810_100660882F014909N/AMAISTILALLFGLVTAFFAAVHCFKPDMIVRQANETARRTTKLLHFALPIQPREGRITVRQVRSTGLGLFLLSAWFLLVAIMSILGHH
Ga0310810_100660884F002235AGGMLDALLRTQHNRLPRRSPVAVYCDLTRIMKQKKIETHKIGLVGQAPSRRGDPRKPLAGPNGQKIARLAGLNYDELIACRRKHLNTHYNGKRGKGDAFDRAKGSVKAADVLLDWRVERIVLLGRNVARCFGFRDLPFLAEISIYGRRFLIFPHPSGTNRWWNERRNERRARQLLQRFLRGETVSTGFRKSGRSTRTRSG
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