Scaffold Ga0316619_10263999

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316619_10263999

Scaffold Ga0316619_10263999

Overview

Basic Information
Taxon OID	3300033414 Open in IMG/M
Scaffold ID	Ga0316619_10263999 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1289
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3776	Long. (^o)	-82.5117	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057967	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316619_102639992	F057967	GAG	VNRDAKTQSALIALARNRRMQRALAHAYLHRGAPMPTLRSSLGYMVTTACIADVDKPPANEAVDRAASRGHAMSVLGISRNEGVAYVVEELGANEAPIVYRLWLRGPRQGHLVPIHAWYEHDHSVEEIRGRIAAITPTLEPVMQSTTEAWMLSTRVIQRRALRIAGPTACADLPIRKFALQLMVEPVSGVGPSGKTTVTAFLRPGAQLAEVWSLSN

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