Scaffold Ga0316622_100160316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316622_100160316

Scaffold Ga0316622_100160316

Overview

Basic Information
Taxon OID	3300033416 Open in IMG/M
Scaffold ID	Ga0316622_100160316 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2355
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3778	Long. (^o)	-82.5111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052684	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316622_1001603164	F052684	N/A	RKTFLGRIKIGEWGVSVELGSLTGHLRAGSPRVSLRGPDLVDVELPVDVEETEGDAMVRLGWDSAGLANVVCKDFELVREIRGRVLAQRHLVSGALRLHNSGESLTATPVFPDRRIRLKLDLTEPSWGVVEAALRSQDTSGKCGTLMDPDKGLKRLRALAARGIKVRLPDSIFRTVSLPARLQKSVHVGQRTVGLRLTAESLRVETATLWSSVSVQVQTEP

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