Scaffold Ga0214471_10015517

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214471_10015517

Scaffold Ga0214471_10015517

Overview

Basic Information
Taxon OID	3300033417 Open in IMG/M
Scaffold ID	Ga0214471_10015517 Open in IMG/M
Source Dataset Name	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5998
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	42.9888	Long. (^o)	-108.3994	Alt. (m)		Depth (m)	155
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026217	Metagenome	198	Y
F050961	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214471_100155175	F026217	AGGA	MKLDVQASASPKELLALDAGKAENRIAEHPVWKSVFEGTLPKAQLKKLLLAFYPVVSGPGRYAFAAKVSQIDAQDGKELFLQVHESLKNPAADADKGWKKVLLGLGATERELDAEPLAEAADLVDVLREHGLRSGPVHAAVIAHMLEQHLPRLWGSLADALQKHYGVKAGALEHLRFEAGRAAKVEKWVGHLVDKYVAVADPYTVFEARRAAREALWAWTALTET
Ga0214471_100155176	F050961	GGA	MKKTAPPKGMPWSAPVLIRKEGKKLAVELPPQVAGDLKAGPGDVLNFTKLPDGEIQIWIVKKSGYASLKDMK

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