NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316625_100004380

Scaffold Ga0316625_100004380


Overview

Basic Information
Taxon OID3300033418 Open in IMG/M
Scaffold IDGa0316625_100004380 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4115
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3792Long. (o)-82.512Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F004285Metagenome / Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0316625_1000043802F004285GGAGGMSLTWITNRSMKVSPRARLVDDEDAAALRRKLDALAWRPEGGFLRDQPVVRPRLATPRGTPAG
Ga0316625_1000043805F000982N/AMPPWKPSSRANQLLMHYHLRGKAYPSARYWDRLFQMLEEEAERRGRTPPPPPLLHGLDHDPTDEDRTERLREQLAWADRNKLLHRVQMFFESMPPSGWERKSR

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