NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316625_100048996

Scaffold Ga0316625_100048996


Overview

Basic Information
Taxon OID3300033418 Open in IMG/M
Scaffold IDGa0316625_100048996 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2032
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3792Long. (o)-82.512Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021128Metagenome220N
F065471Metagenome127N
F079679Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0316625_1000489961F065471N/AMINVGNDNFSLATLDQDGKPPETRISNASHAWNIANHLRLANIGRENKRLRIYKAYKMFPPTGYSKLAEKRLPWQSDVNYGQLGFIVDNQKSSYYDVITERQACCTIKTKYGNEKERLVNSENISIAFDQVIREWPGYLYNTEQDLEEMLLYGKGIGMWDSPLGWMPEHVFLSDLLFPDDIRIDFCNLEEFVRRVRLTPYELYKKIENRAAAEAMGWNVDAAIDAIRFHRAFSNHRKTREDFFRTISEAGFNWSLSVNQKIDLYEVYWREFDGKISKAIILQDYQPIADYINSNIKGAG
Ga0316625_1000489962F021128GAGMKLKNKNLAPVGGWFWRYEIKRGKLTFPAIVYGSTFNSLMQNIQKDYNSNGIQVPENIEQMVEDQICQRQPSDRCWYSDGLGDKIAQAIHTVAATADKVLGTKLERKARSCSSCNRRRNALNSLS
Ga0316625_1000489963F079679N/AMQFPENLDDLGVELFCYAMTRGQYGRSYCTRHNISLSEFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWIYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQIGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNERVRLALDELPEMELGAITARTNLAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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