Scaffold Ga0316625_100255976

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316625_100255976

Scaffold Ga0316625_100255976

Overview

Basic Information
Taxon OID	3300033418 Open in IMG/M
Scaffold ID	Ga0316625_100255976 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1207
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3792	Long. (^o)	-82.512	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316625_1002559762	F002421	AGGAG	MKTCTICKGTIAYPEITGKTHFVCDGRVPAKKPFAVGMALSQASADAKWTPEEQRKVDAAIVHVARAKGFFTSDDIWQHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGQHDHAQRLSVWAGI
Ga0316625_1002559763	F002794	GGAG	MSEGTAFNQGELTEETRKMVMESSAMANHTMAIFGLIDDIMAISKNPHASIIRRLQTMKNQLSLNEPMPLYDVTTLDLAIKALQAHS

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