NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316625_100521999

Scaffold Ga0316625_100521999


Overview

Basic Information
Taxon OID3300033418 Open in IMG/M
Scaffold IDGa0316625_100521999 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)944
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3792Long. (o)-82.512Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F001490Metagenome / Metatranscriptome685Y

Sequences

Protein IDFamilyRBSSequence
Ga0316625_1005219991F001490N/AMNQTTPAQILQQITQIQHMEPGKLCVIGHGPNGPYYNLQCRENGKPLTLYVPADQVPLVTEHTASYRQFQALVAQYAQLIVDRTRAERAAGAKKKTPRRNSSWPRTRKSGR
Ga0316625_1005219992F000926AGGAMARFQADTPNGVAVQELEVLLRTAVFKSANQVVGYLLQRAANRIDANYQPPPGYHYKGRATIMLDGIFGSFELERDYYYHPGKKQGHCPADAALGLEGSATPALARLVCFEGADAASYQKAEEHLGETGGIHIGARQVQRLVQSV
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