NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316193_10175124

Scaffold Ga0316193_10175124


Overview

Basic Information
Taxon OID3300033429 Open in IMG/M
Scaffold IDGa0316193_10175124 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Merrow Island sediment 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8826Long. (o)-69.6616Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013320Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0316193_101751242F013320GGAMETSEAVQVIVDVMTPYIGDTMARSATEAHCQKLGIPTDSPLSSQQLESLLGKLSGGLNIFLGRDKSAA
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