Basic Information | |
---|---|
Taxon OID | 3300033433 Open in IMG/M |
Scaffold ID | Ga0326726_10000668 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 31324 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (53.85%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.3286 | Long. (o) | -76.4792 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002465 | Metagenome / Metatranscriptome | 557 | Y |
F006066 | Metagenome / Metatranscriptome | 382 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0326726_1000066818 | F002465 | GGAG | MPTSKPPKPDPLQDLTPRRIAEFALEESRLSNVAYRFQLVPRDRVWKNWDRTEFEPNHFKVVALAGVCLEREEVEKAHRTASRALEEIDGILFVVEEPADSIVVRGSTGTMEFVRTPTLCAEIMAGSSAAFDRALAALEAAFPGERVAGKIVSEGRS |
Ga0326726_100006688 | F006066 | N/A | MRRRPGEAPATHRVWVSQDQPLREAPGADGKVYFRIRLEGEPSPEWMRAYRAGLLGLVPEDRDVVMRFEFLGDSVRFAATDAEVGKIRRVLEKRVEAVNGILSGGRSVG |
⦗Top⦘ |