NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10000687

Scaffold Ga0326726_10000687


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10000687 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30823
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003908Metagenome / Metatranscriptome462Y
F020435Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0326726_1000068721F020435AGGAGMIRLSELVSALTPAQYAELSLVLFLAVFTAVAFRHGGKRRAAEHAECAQLPLADDAGGRP
Ga0326726_1000068730F003908AGTAGGVTRILFLGGFLAAACSSPSKQPMTLEQMIAADPLPLAKGAKWTYNVTVKRYDPDSDKETSKTLTWTTEVLDAREGNGVTAFRVKGWPDDLAALEDSSATPTATERTLLRSGNNFMFGTSAEPTLEGAEGWFTWPVIDGQKICPKREMVYCWQVSAVETGYALSFYTGPDEKTFELEPGTGVSRFHYAHHGTTNEVEAKLASYTKGK
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