NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10000765

Scaffold Ga0326726_10000765


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10000765 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29477
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (74.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001209Metagenome / Metatranscriptome747Y
F006675Metagenome / Metatranscriptome367Y
F014910Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0326726_1000076520F001209AGGAGLHSPQEEPVSPDVLVNNAGTLYTFCPLTLRAKEWIDEHVQDDAQWFGNALIVEHRYAWGLAQGMKDDGLVLA
Ga0326726_100007654F014910GAGGMGRWLTWVSHQRLTGWACSQCGWTFPVPAMLTDKEAKSAYDRLAASKFQEHDCSVHGEPAALVDSESFAARARKLVTRGFKPKDAAQITLQEITFENRNDPGAARKAQADAEDFLRRVKDGLI
Ga0326726_100007658F006675GGAGGMETSTNGSNGQSQAADPHVQEVIRSAERELHELLERRAELMKRIGTIKQTLAGLANIFGDGVLSDQLLSLLDRKSASRQPGFTRACRVVLMDAKKPLGARLVCQALQQRFPDVLERHKDPIASVTTVLNRLADYGEARCSLDASGRRVWKWIAEPGDSADLLLAGDDQFFKQQAGKRQ
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