NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10011207

Scaffold Ga0326726_10011207


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10011207 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7909
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000309Metagenome / Metatranscriptome1327Y
F000828Metagenome / Metatranscriptome872Y
F010187Metagenome / Metatranscriptome307Y
F012059Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0326726_100112074F000828N/AMKEAGTSIFEERYRIVAVESDRLVIRGILSGEVLTIINPEPETPLNPKDYPLGKLIALTDPSTRSLN
Ga0326726_100112075F000309GGAGMKPDEKQSLERVLESAAVVSWADLMDSAQTGLIHIEYGFAAGGTLDYVKFWSSITRGHWLLACEYWMSTSTLQRAGVHFDNGYGSEGLTRILESVMRHQTAFSLPTNLGRQGLLQIPTPTPEESAAAAASVHEALDHLGSVLPEPALA
Ga0326726_100112077F010187AGGAGGMHPEDLMKPDLFSELMLLGSGGVIFAALLLVVVTALTRG
Ga0326726_100112079F012059GAGGMRKQYLHLSAYACDKCNGPVVSGSLTVRENEISKETDIRQVGAICLSCGHRQSKGTEVEVTREFPPVQWEPMKVIEVSRTSTAFAEMLSRAT
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