NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10015953

Scaffold Ga0326726_10015953


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10015953 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6543
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034662Metagenome / Metatranscriptome174Y
F081260Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0326726_100159535F034662GAGGMPAANISALGATRKMLGFSRRTVEFESDTVAGLLRSLATVDGHSLYDKLVCEGKLRGDFAIVVDGLSLKSDQLNKPLQGGEEVVTMAILRHLHGG
Ga0326726_100159538F081260N/AALRSAQLCAEALLAGRPAQYRVRLEQEVLPELRLAARVAQRFYTGQVLGDSVLERMVAFTQQSENFRDLMRDLFAGIQGYRDLRSRLYRTLPALIAEGLAGSLQLPWSGSGFATDPFAE
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