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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033433 Open in IMG/M |
| Scaffold ID | Ga0326726_10076762 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2955 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.3286 | Long. (o) | -76.4792 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004237 | Metagenome / Metatranscriptome | 447 | Y |
| F031274 | Metagenome / Metatranscriptome | 183 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326726_100767622 | F004237 | AGGAG | MSTPYEVADMMIGVRNMIEAADLRRGDQVLLLADTRSDKITLEALTAGLRFYGAEPMTLVTEPIARYGEVPKAVMDAMHASDVAIWVWPVFITFTPTHRALGRKREESGSQLHEARMKPYHIYFEGNAGLLARDYAKFPNKVLWKLAEKVREVVAPGKVVHIVDDLGTDLTATYDGNRLYGMQFRAGDPPGRCHFPWGRCGVFNGEGNSNGEVYLSCVQGVAGQLAEPMRWKVKDNIITEVDGGGEVGEECKRLFKEVPESNRLIEIMFGYHPKASSAHGIADPMHWELISKMPWAGLGTPRKHPKFRHMDGSVFDARLYIGDRLVVDKHGMLDRSLLHHPEVLEVAAEFGDPYRVLAPVSHEAHGSNTSW |
| Ga0326726_100767623 | F031274 | N/A | IEANSVAYVPVGFGAQRLAALQVGSVDAVPLGAGDFAQLKQPKGHMLGDTEKEIRFAYVGLAVASKLIARQPELVEKFLRSVIKGREYARRYREQTITILGKYTQRKREFNEVDYDSTLPVLTAEGWVGDDVIKEDVAMRAELVNVPTPGDYHKFFDYSIVRKIYRELKTSGWKPAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |