NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10122896

Scaffold Ga0326726_10122896


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10122896 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2345
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008449Metagenome333N
F074052Metagenome / Metatranscriptome120Y
F099795Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0326726_101228961F008449N/AVVDANGNSMLVTVQTAYGFNITVHPAYASKFLKFFALLKERGYKVPANITKCWAPHGTHVPGSNHYIGAACDVQTGWNRGPEFVYHMNDIVTQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0326726_101228963F099795GGAGMVEAQSPFATVARKIGNPRLEKVLAQLAANIAMEAQSAERIPKRSEVRDNLKLLKGEARRFEKALSKISLLDISFSAIECLRVARKTARDVSEVCDKTLSNISVKRGAPKRPGRITCALIVIEAWDFARGGPPGANNPKAQKACEDYWRAYGGPPIGKEEPGNWRKTLKDALADRSALRRYIRDEIRFEAERRSSELSAMGVGGVRKRR
Ga0326726_101228964F074052AGGAGMRKVLGFILIAFALVAGTATFVTVNPHQAFACEDGDKRGS
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