NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310811_10011591

Scaffold Ga0310811_10011591


Overview

Basic Information
Taxon OID3300033475 Open in IMG/M
Scaffold IDGa0310811_10011591 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11442
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014885Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0310811_1001159110F014885GGAGMMTFLPPRLRKPTMFTLAGLLFAGAWLVHGGPLWWVSIPAVIGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSMRSRALACNLAAITSFIGLTVAIALRAPWWWPFLITLLITGYGYLFGLGTYGVAEEGTPDDADASSQTQFPVSS
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