NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310811_10662809

Scaffold Ga0310811_10662809


Overview

Basic Information
Taxon OID3300033475 Open in IMG/M
Scaffold IDGa0310811_10662809 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007765Metagenome345Y
F066540Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0310811_106628091F007765GGAGGLFRSFRHELDPLDLEILEKAFDAAWSAVKENDPHIDFDSDEGLEAILRRELIEIARFNDVSDPETLRDILLERLPQATP
Ga0310811_106628092F066540N/ALDGAERRHHLARSWRAPDDLHVEVEGGDIMVTLPGTRYAVTYCKPTNSRQLQGKHFPEHVDRRSPISQAAFVGKAWKLATDKARELGWIV

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