NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326765_100189

Scaffold Ga0326765_100189


Overview

Basic Information
Taxon OID3300033476 Open in IMG/M
Scaffold IDGa0326765_100189 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6909
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F076264Metagenome / Metatranscriptome118Y
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0326765_10018910F085905N/AMEEKLSFPSSRLSQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKDFEYGLIYVYSNSRVDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSILEVIRRHMRK
Ga0326765_1001894F076264N/AMNLYAVGGMSAISSAIQNMVNGLQNLFVALVDVFANAVNAIGNTLASLAQPIGYLVGVLAVFGSLIAIIYYVFRGRGGVGGLISGIKSFFTSFL
Ga0326765_1001896F087445N/AMSASSVKPTDELVQRLLNMSEYDLKRIFKMIPIDKRLMLALDTIQEYQNLRSKFDNLFNAFAMNSPKVKEVMENAKKNRKPLDRLADMFMDLMETMLKSKAMTLTDEDREKLREKVREMIESEE
Ga0326765_1001899F063848N/AVAKKRRSVHDATLSVIHYQQQLEKMAKAYEQSASRRNQRAVNGFTILKQVQQTVRDYLNEVSEAMKKPIIGQLSVEFLGVAMAYLKASNEGYNSYALTGRVAQIATLKATDLMHTTTLTCSEIAEIINGMLKKLSGVTNNPLTFTEHDGICEATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLMAK
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