NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326765_100234

Scaffold Ga0326765_100234


Overview

Basic Information
Taxon OID3300033476 Open in IMG/M
Scaffold IDGa0326765_100234 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6289
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F075084Metagenome / Metatranscriptome119N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0326765_1002342F061983AGGAGGLKKFVFKVKVVPVKIFNEDGVLSEQEFEQVKKTGVYKGLKVLEIKDLGLDSFWRFMHYYELVAVSEGGGQFDCYYGDVIDVEKLKGVGAIVVKESDAPPVRTMKTLVAKWFNKKLVEEEKAYEVCNTFVT
Ga0326765_1002343F080247N/AMIVWGKLVDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKTTPGGGTIQVCVPIDATFMAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0326765_1002344F076263N/AMLSAEDLSAILDDLEDICARIPEGVTFHPTLEIHRHYANEEATYIKFDCRNHRYILTIIREGVAKTTRVSSREELFRRLFPEYSPGFTEEIWGGE
Ga0326765_1002345F081547GGAGMPYLRGVFVNFGEETYYLSCGIVNGGNLDTETYTINKPELMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNEVLSQGNEVRPS
Ga0326765_1002346F087442GAGGMMREGLVKAGNLVIDCKPCYIAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVSEEGTKVNLLNIIDVRFLVERNENCVAIRL
Ga0326765_1002347F080245N/AMIFVWSAKVVLPGFNKEVFVSPALINSYVQITEDVYEVGMFMVPHRSHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTISNVFT
Ga0326765_1002349F075084GGAMDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILKWSINYCRIMKELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTKMTEECSTYEVRG
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