NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316620_10136204

Scaffold Ga0316620_10136204


Overview

Basic Information
Taxon OID3300033480 Open in IMG/M
Scaffold IDGa0316620_10136204 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1942
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075043Metagenome / Metatranscriptome119Y
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0316620_101362041F092306N/ADQLDGGLHPVVAIGGMTVADGRPLNLTGVVVSVNRTVLGTGTDRVEVDIACGKIVRQFVCNILTYNGGNPATYETAPIVGQPVYVDDSDDLLAGTTLSMSPLNSAGLKNPQAGVLWYCQDEIADASVGGARATSTFLGTLANSNTEAEYCVLLISKRDLA
Ga0316620_101362042F075043AGGAGGMRKIVYALKRIRQDQLRERQAPDTRIRESDDMFDAFDRDLSGIRSYGATETLREVMTSADFTHAIQEFVQRLALPGYQNQTFNFEPLVRQEYNLPNYLPVTRYQNRGSLDDLEYVGEKGQARPGSVNDATVRTLQVWDFAKQYDFSKKALVDDDLGYLQNTAEDAGKAARRTLERYVSRFYTNAVTIARLVGLGALYSTTGRLTTARISEARMAFGQRTDARGNPIVADLRYVVYHRGLEDTVRQIQASELVPELATNAANVVRTGWDAIEDPYIAGAAPNLPWYAFADPNSGNNVIPFVLARRTGMPGPLILRKRSDIEAITSLLGAGRPVDPIWGDFESGNVVFMVLDTWGTYIDGTEGNLFDFRGAYYSAGTAP
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Biomedical Sciences Research Center "Alexander Fleming"
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