NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326763_1007195

Scaffold Ga0326763_1007195


Overview

Basic Information
Taxon OID3300033484 Open in IMG/M
Scaffold IDGa0326763_1007195 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.7091Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0326763_10071951F023762N/ALSTILRRTLPAPGGTPRMLTPQERGRLGGQATLARYGRDHYAAIGRVGFARAIEAGWGEYLLEKLAPSYRTKFGRDPMLGRNKAGDQARAQARKATPTLGRCAWQGCAAQATERHHVDGWKASADTCGLCDAHHTELERSYRDALRRHRPFARMQEPPTKRGVAISAGVGLDDAIPF
Ga0326763_10071953F041515AGGAGMGMNQMIVLQSGRDTHDASEAQDEPQPCPFNAAPTTLFEVIDRAVSAVLGQFDRWCDRDEREGEDEAHFEDYVRWRVAIIDDAAAQARTLMIADGLTAEGSPWLAAHARA
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