Scaffold Ga0326763_1007336

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326763_1007336

Scaffold Ga0326763_1007336

Overview

Basic Information
Taxon OID	3300033484 Open in IMG/M
Scaffold ID	Ga0326763_1007336 Open in IMG/M
Source Dataset Name	Hot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2527
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.7265	Long. (^o)	-110.7091	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043237	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326763_10073361	F043237	AGGGGG	MDLEKTARYIAQLSRHGYKYAIIGKLVRYDRELVKRLEYNGFVFYLCRLPSKKEVVSYCLPRTEGPFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINACLNAIEKASEVKYPSPKLYIAQVNKALRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKNQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASATEGGRGRG

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