NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326763_1009846

Scaffold Ga0326763_1009846


Overview

Basic Information
Taxon OID3300033484 Open in IMG/M
Scaffold IDGa0326763_1009846 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2021
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.7091Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F042663Metagenome157Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0326763_10098461F074201AGGAGGMDKVDITPTPEACRQIARVFRAQRADAEALAARAAQALDTLDTLDDDTLAPWDRNILAAAFKALYEDEHARVRHMDEGLGALGPYADAAKGEGANDAS
Ga0326763_10098462F034417AGGAGGMTWTISTPRSAWIAQAKTAWAALEPHAPQGTHLRDLAAIDHGNFARLIEALYALTPGQGSQERQGLAGLRPVGEVLDMPDRGDTRLDAGGDGGDW
Ga0326763_10098465F042663AGGAMTTQVMPVTCVAASIPSISPRTAIALYDGDVSLTATFRPLDPLGATEVVASIALPDDAALLTLLDTTIARLTAYRDAYCQAMDEDADPAPVRAPVPLPVPWYAW
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