NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326760_1006000

Scaffold Ga0326760_1006000


Overview

Basic Information
Taxon OID3300033490 Open in IMG/M
Scaffold IDGa0326760_1006000 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4001
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6904Long. (o)-110.7291Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0326760_10060006F100012AGGAGGMDREKVLQALKEAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWVHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARITSADDAVDAVTGLAELIEQNLKSRAVE
Ga0326760_10060007F069506GGAGGMQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWNDPEFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVSGTVIYYEDIIGLVIKLLNKIQPELVAE
Ga0326760_10060008F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLRLVQQA
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