NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316612_1017867

Scaffold Ga0316612_1017867


Overview

Basic Information
Taxon OID3300033494 Open in IMG/M
Scaffold IDGa0316612_1017867 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1785
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)45.1993Long. (o)-83.3279Alt. (m)Depth (m)185
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102832Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0316612_10178675F102832N/AMMINTPPNPHLHKAVVSGSYYLVRYCGGSYDDYYSAVVFVTNKKSTAKKYCSKFNKALKKWKVYYEQFETDTFGMKWIADEHIEKHFDRWNGLKNITKCYYEDVSFR
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