Basic Information | |
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Taxon OID | 3300033513 Open in IMG/M |
Scaffold ID | Ga0316628_100055713 Open in IMG/M |
Source Dataset Name | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4145 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 41.3769 | Long. (o) | -82.5097 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000823 | Metagenome / Metatranscriptome | 875 | Y |
F000825 | Metagenome / Metatranscriptome | 874 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316628_1000557131 | F000825 | AGGAGG | MRSSSLAIASGLALVLATAPANAAWKSYISHTLGFSFEAPGDLKTETGTVRGAIAGPQETIIFRSVDDNIEYKVTVINFTQAAAEGATLLGEMHFMFDQGKKVLMDTFGRVEPGKDAVYGRKVTADLPNNGGRATAAFYFTKGHLYMLQATVLPANGDYTSPDPGRFVDSIAFNATRAEQGSTELKLPE |
Ga0316628_1000557132 | F000823 | GGAGG | MRFFSIAILAGAVLAGTTPAEAAWKSYISHPLGFSFEAPGEIKAEKGTYRGAVAGAHDTTVFRSTEDNIEYKVTVIDMSAQANNAASLLNEATYIFQDDRKLLMDTFGRVDRQYGRKLTIDLPNNGGRSTAAFYFVNGRLIELQATVLPANGDVDSPDMGRFVDSVAFFTVRARPDATELTLPK |
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