Basic Information | |
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Taxon OID | 3300033521 Open in IMG/M |
Scaffold ID | Ga0316616_100002748 Open in IMG/M |
Source Dataset Name | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8073 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (88.46%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 41.3776 | Long. (o) | -82.5117 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000684 | Metagenome / Metatranscriptome | 938 | Y |
F000808 | Metagenome / Metatranscriptome | 882 | Y |
F011386 | Metagenome / Metatranscriptome | 291 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316616_1000027481 | F011386 | AGGAGG | MKIRITSMQGNTRDISLQSKQEVYDFIELYKSTLLKNQRVKITCDLLGIDGYLQGVA |
Ga0316616_10000274818 | F000808 | AGGAGG | MEYNYSLTIAYDGELVSTTRTADMLEIVNAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRNGEVTTK |
Ga0316616_10000274824 | F000684 | AGGA | MTLNGYTYQIGDLFTTSKTGITGRISNFTPINAKLTRVSLRMANGAHRFAMVKTSK |
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