NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316616_101579381

Scaffold Ga0316616_101579381


Overview

Basic Information
Taxon OID3300033521 Open in IMG/M
Scaffold IDGa0316616_101579381 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)854
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003265Metagenome / Metatranscriptome496Y
F067527Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0316616_1015793812F003265N/AMRLLALLLLLLLAGAAAKSYCSISDFYGLAWTLHNPSERHQRLSQWLTTNGDSCNAEQLVVIWNNLGVWAGTADSAELRQKVLYFYARAMEREKK
Ga0316616_1015793813F067527GAGGVISFDKWYPMVHPNYDTKTVAVDKAIEKAQEEYRQAVKANKLELRTLEVEIELYNKKARVNQLEMEIFANHRRFQIFV

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