NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314767_1109608

Scaffold Ga0314767_1109608


Overview

Basic Information
Taxon OID3300033532 Open in IMG/M
Scaffold IDGa0314767_1109608 Open in IMG/M
Source Dataset NameMetatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)690
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3956Long. (o)-85.3757Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044264Metagenome / Metatranscriptome154Y
F060544Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0314767_11096081F060544N/AMRWIGCVRCEKFRCDFMARTCALIAPNQRIFHRVSCSIETLPIEPKHYETHQNMSLGSNVVHPFRSLRKIPMRLRGTNLCTSSARFAPSFVRQPNGPECTQIVRNAPKCQFRVQWSGSGAFVGKNSDAISWHELLH
Ga0314767_11096082F044264N/ARTRSTPFGPKLMFWCSSYHLSTSSTVWLPQETRWKTGQTSAKVRATKSGRNFLQRTHLILPIDPKLTFWCISCNFGALGTVWLLTKLSAKRAELVQKFMPRNCIGIFPNERTRSTPLDPKLTFWCVSYYLGAFGTIWLPYETRCKTGRTSA
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