 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033547 Open in IMG/M |
| Scaffold ID | Ga0316212_1000859 Open in IMG/M |
| Source Dataset Name | Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3952 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.9979 | Long. (o) | 10.7895 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001920 | Metagenome / Metatranscriptome | 617 | Y |
| F002886 | Metagenome / Metatranscriptome | 523 | Y |
| F018804 | Metagenome / Metatranscriptome | 233 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316212_10008591 | F001920 | GGAG | VFENRVGEGMALNWRGPLLAAGIFAAVFAILLLMAHQNQSNTSDMGSSLREDPYGTSLLFDACGRAGYQVKRSQDEDSLADQNASTTTAFFIGSNPLAHWDPDNKNGPEDKFRGRLEDFLARGGRVVLVAHGLELKSKSQGWEVENKWDQGSHDTNNPTWISPDLRALPAASEMMYAGGESPWLKTDEHWTTLYAGPADASAKADASPRVYMAMRRVGNGEIIAASQESFLLNEAIKTHPNPVLLDFLAGERPVIWVDETLHGLHQEQGVLWLVQRYRLQAALMLFWATLLLLLWSMSGDLVRRPRHDRASQIMRDGEDTGVAARRLLQRSVTPEQVVAECWDQFCRRSPQDAQAISADP |
| Ga0316212_10008594 | F002886 | GGAGG | LKSAFRKISRVGSLTGGTKWYLSEDCLLAAKRVMYAVEYRRFYLRDVESIVVWPTRAWLWRVAVEVVLFAGISLLFWQWSSTTGAIFLGIGLALAAWELALGPTAGARICTTGSSVDLPLVARTRRARKVLATIDAGIRSVRGVTEQPAAPISNIEPAQLSPQMPAQTNFEVTPGSVPVADAPQTNGS |
| Ga0316212_10008595 | F018804 | N/A | YDSIAVTIGWGWILFWPTIVAAIPAAIFLHIKYRKAPRSYLLPRHGWRFWMAYAGLAWLPLLLGGSLLLRWMARRP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |