NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247830_10423720

Scaffold Ga0247830_10423720


Overview

Basic Information
Taxon OID3300033551 Open in IMG/M
Scaffold IDGa0247830_10423720 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1038
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005008Metagenome / Metatranscriptome415Y
F007426Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0247830_104237201F005008N/AMTRRGDLAKPRLSDRRRTIPGDQTLIPTVKKVKPQKDMTGKRKPNAARSAPNLGQREAEVQKVSETKLTRMKATTAHSAPGRFIAWCKQEQASIQQQLDLMETAKVLTGENRGSGWVDTTAESIERARARLVELESLLTESGPATVSKPKR
Ga0247830_104237202F007426N/ASITNWLDGLVSGTYWGQIAVNHLRERVNMTHVVLSIPAIVIATILVGIPLNWLLGGTRSGLQRIAIALVSVPATVVLAVALFTFNALVPETYASLLRFADWIWQASLSALSSRGESIPGAIKLVNIARQGFSGHHYVIMALCSVVASFLVNALFAFATKPGETLNPAQLAVAWKNNQDRR
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