NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371490_1003159

Scaffold Ga0371490_1003159


Overview

Basic Information
Taxon OID3300033561 Open in IMG/M
Scaffold IDGa0371490_1003159 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7271
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002886Metagenome / Metatranscriptome523Y
F055033Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0371490_10031596F002886GGAGGLNSAFRKISRVGSLTGGTRWYLSKDCLLAAKRMMYAVEYRRFYLRDLECIVVWPRRSWLWRLIVPAVLLAALGFSLWQWVNSTSGAIFIGIGFAWVMLELALGSTAESRIRTTGASVDLPLVNRTRRARKILKAIDAAVRASRDVTMEPAVPTPSLQPAGVPVQTNSEAASAAASIADASQTNGL
Ga0371490_10031599F055033GGAGMSNSTMSDDTPGKSIALNWRGPLLAAGIFAAVFAILLVMAHQNESKTSDMGSSLREDPYGASLLFDSYARAGYQVKRSQDEDSLSDQDASRTAAFFIGGYSPDDWTTNDGKANDGKTNDGKLQAAAKFRGRLEDFLARGGRVILVEPRWELKSQSQGW
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