NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371489_0114908

Scaffold Ga0371489_0114908


Overview

Basic Information
Taxon OID3300033755 Open in IMG/M
Scaffold IDGa0371489_0114908 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1538
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0371489_0114908_1227_1391F010139AGGAGMNSVFMRSPEGEVKEVEATTEKLTILMASGWHQVPAPETAQKPVVVAEEEEQHG
Ga0371489_0114908_393_716F002261GGAMPNWPGLEAFVDGVMLQTFGEPVVYQPVQAGVAYGNAFTVTAIRHLRVREESGATANFEEISVNPTDFTNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
Ga0371489_0114908_713_1216F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGDGNNIRAFMEGLANDNNLRLAILQMPPGSILIAWNGTTPRRLTGGSLHFAHRFAIYLRAPEEDSTATYADLFWLLVSAKPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
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