NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314862_0026466

Scaffold Ga0314862_0026466


Overview

Basic Information
Taxon OID3300033803 Open in IMG/M
Scaffold IDGa0314862_0026466 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0314862_0026466_43_468F047595AGGMDFDIGSNQYRNAADGIEIDGIAQFSFEHNRRYNEMMLRGFIFDQRGAMVAKISENSLALNLQGEFEMRAEHPVVQLLHRETEEVLLEVRFLDGNRVQIHKAKLYSAKGHPFEVTPTLWRLKDDTHRGENVDCDGKPVSLK
Ga0314862_0026466_472_1023F022846GAGGMPIAAPEELGRELSDLAFGIIEQNWLAEHIGKAVDVKSLDPMQANAAEWELTYLILFAVTSGCGTFSTTDRDRTTAALKAFHAAFLKQIAGQVGQDIADAHEKNLVPRYRLYGQTLEGEDTTYPYKTSYKRLGEAAALQILGKPVENAQTADIFRETIKVIFTEVREAAIKVMRYRQALEEKA
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