NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314863_070166

Scaffold Ga0314863_070166


Overview

Basic Information
Taxon OID3300033804 Open in IMG/M
Scaffold IDGa0314863_070166 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009891Metagenome / Metatranscriptome311Y
F092171Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0314863_070166_277_567F009891N/ALPASSKDKKEKRRKHMSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVANSALKMLLWKDRHFMNWRKQQQQAARKDAPISTTQKPPAKA
Ga0314863_070166_2_280F092171N/AMIQRILNSKNLVAFVLAAATGLTLYFRAPFSEDNVFLQVMALRSPSVFQVLKYSYALFLFSTPYIGYSVVLSGLYIFALKAKQRIRAGRLPLF

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